Major cell types

Only major cell types

## [1] "Endothelial"     "Epithelial"      "Fib_Mesenchymal" "Immune"

Major cell types and immune subtypes and T cells as a group

## [1] "Endothelial"     "Epithelial"      "Fib_Mesenchymal" "Myeloid"        
## [5] "NK_cells"        "Other_immune"    "T_cells"

Subtypes

All subtypes

##  [1] "Myeloid"         "NK_cells"        "Other_immune"    "T_cells"        
##  [5] "Tc_cells"        "Th_cells"        "Epithelial_1"    "Epithelial_10"  
##  [9] "Epithelial_2"    "Epithelial_3"    "Epithelial_4"    "Epithelial_5"   
## [13] "Epithelial_6"    "Epithelial_7"    "Epithelial_8"    "Epithelial_9"   
## [17] "Endothelial"     "Fib_Mesenchymal"

Subtypes (T cells as one group)

##  [1] "Endothelial"     "Epithelial_1"    "Epithelial_10"   "Epithelial_2"   
##  [5] "Epithelial_3"    "Epithelial_4"    "Epithelial_5"    "Epithelial_6"   
##  [9] "Epithelial_7"    "Epithelial_8"    "Epithelial_9"    "Fib_Mesenchymal"
## [13] "Myeloid"         "NK_cells"        "Other_immune"    "T_cells"

Only Immune

All subtypes

## [1] "Myeloid"      "NK_cells"     "Other_immune" "T_cells"      "Tc_cells"    
## [6] "Th_cells"

Subtypes (T cells as one group)

## [1] "Myeloid"      "NK_cells"     "Other_immune" "T_cells"

Only Epithelial

All Epithelial subtypes

##  [1] "Epithelial_1"  "Epithelial_10" "Epithelial_2"  "Epithelial_3" 
##  [5] "Epithelial_4"  "Epithelial_5"  "Epithelial_6"  "Epithelial_7" 
##  [9] "Epithelial_8"  "Epithelial_9"

Stromal cells only

All subtypes

## [1] "Myeloid"         "NK_cells"        "Other_immune"    "T_cells"        
## [5] "Tc_cells"        "Th_cells"        "Endothelial"     "Fib_Mesenchymal"

Subtypes (T cells as one group)

## [1] "Endothelial"     "Fib_Mesenchymal" "Myeloid"         "NK_cells"       
## [5] "Other_immune"    "T_cells"